Présentation de l’application de colSBM sur Doré et al. 2020
Clustering avec le modèle iid
Avec le modèle iid nous obtenons les 5 collections et les structures suivantes:
Pour la collection 1
Collection 1 - iid
| Networks |
|---|
| arroyo1982_1+arroyo1982_2+arroyo3 |
| eberling1999 |
| kato1990 |
| petanidou1991 |
| Junker2013 |
| bartomeus2008 |
| Benadi2013_1(950m)+Benadi2013_2(1170m)+Benadi2013_6(2020m) |
| Benadi2013_4(1700m)+Benadi2013_5(1800m) |
| Struck1994 |
| Kato2000 |
| Albrecht2010_49yr+Albrecht2010_63yr+Albrecht2010_84yr+Albrecht2010_109yr+Albrecht2010_130yr |
| Baldock2011_TB+Baldock2011_JN |
| Dattilo2016 |
| Devoto2005_PP+Devoto2005_AP |
| Devoto2005_VT |
| Devoto2005_LL+Devoto2005_CT |
| Freitas2006 |
| Gibson2006_TA2 |
| Jedrzejewska2013_Ochata+Jedrzejewska2013_Kabaty |
| MonteroCastano2017_Albufera+MonteroCastano2017_Llimpa+MonteroCastano2017_Tirant |
| Kehinde2014_Joostenberg_Conv+Kehinde2014_Joostenberg_Org+Kehinde2014_Joostenberg_Nat+Kehinde2014_Laibach_Conv+Kehinde2014_Laibach_Org+Kehinde2014_Laibach_Nat+Kehinde2014_Spier_Conv+Kehinde2014_Spier_Nat |
| Pinheiro2008 |
| Watts2016_Chicon+Watts2016_Mantanay+Watts2016_Choquebamba+Watts2016_Huaran+Watts2016_Piscacucho+Watts2016_Poques+Watts2016_Pumamarca+Watts2016_Tiaparo+Watts2016_Yanacocha |
| Kato1993 |
| KatoMiura1996 |
| Kakutani1990 |
| Inoue1990 |
| Fragoso_RA2+Fragoso_RA3+Fragoso_RD1+Fragoso_RD3 |
| Souza_cerrado |
| Souza_chaco |
| Souza_pantanal |
| Souza_vereda |
| Adedoja2019 |
| Oleques2019 |
| Baldock2019_Bristol |
| Baldock2019_Edinburgh |
| Baldock2019_Leeds |
| Baldock2019_Reading |
Pour la collection 2
Collection 2 - iid
| Networks |
|---|
| dupont2003 |
| herrera1988 |
| inouye1988 |
| medan2002ld |
| medan2002rb |
| ramirez1992 |
| ramirez1989 |
| Burkle2013 |
| Olito-Fox2014 |
| Benadi2013_3(1340m) |
| Aizen2008_Challhuaco_U+Aizen2008_Challhuaco_D |
| Aizen2008_Cerro Otto_U+Aizen2008_Cerro Otto_D |
| Aizen2008_Llao-llao_U+Aizen2008_Llao-llao_D |
| Chamberlain_cr1+Chamberlain_cr2+Chamberlain_fs1+Chamberlain_fs2+Chamberlain_go1+Chamberlain_go2+Chamberlain_mm1+Chamberlain_mm2+Chamberlain_mz1+Chamberlain_mz2+Chamberlain_sm1+Chamberlain_sm2 |
| Chamberlain_HLU+Chamberlain_HLG+Chamberlain_OKU+Chamberlain_OKG+Chamberlain_WLU+Chamberlain_WLG+Chamberlain_SOU+Chamberlain_SOG |
| Devoto2005_LQ |
| Devoto2005_LT+Devoto2005_LH |
| LemusJimenez2003 |
| Lundgren2005 |
| Marrero2013 |
| Trojelsgaard2015_La Gomera |
| Trojelsgaard2015_Gran Canaria |
| Zackenberg |
| Yoshihara2008 |
| Fragoso_RA1+Fragoso_RD2 |
| PopicThesis |
| Pornon2017 |
| Orford_B1+Orford_B2+Orford_B3+Orford_B4+Orford_B5+Orford_B10 |
| Orford_B6+Orford_B7+Orford_B8+Orford_B9 |
| Blumel2016 |
| Kantsa2018 |
| Bennett2018 |
| Adedoja2018b_baseZone+Adedoja2018b_MidZone+Adedoja2018b_HighZone+Adedoja2018b_PeakZone |
| CordenizPicanco2018_NatVeg |
| CordenizPicanco2018_ExoFor |
| Benadi2018 |
| Hackett2019_NZ_salt_marsh+Hackett2019_NZ_sand_dune+Hackett2019_NZ_scrub_coprosma |
| Jolls2019 |
| Traveset2013_Fernandina |
| Traveset2013_Pinta |
| Traveset2013_Santiago |
| Traveset2013_SantaCruz |
| Traveset2013_SanCristobal |
| Simanonok2014 |
| Son2019_a1+Son2019_a2+Son2019_a3+Son2019_a4+Son2019_a5+Son2019_a6+Son2019_a7+Son2019_a8+Son2019_F1+Son2019_F2+Son2019_F3+Son2019_F4+Son2019_F5+Son2019_F6+Son2019_F7+Son2019_F8 |
Pour la collection 3
Collection 3 - iid
| Networks |
|---|
| small1976 |
Pour la collection 4
Collection 4 - iid
| Networks |
|---|
| smith-ramirez2005 |
| Weiner2011 |
| Kaiser_control+Kaiser_restored |
| Gilarranz2014_amarante+Gilarranz2014_barrosa+Gilarranz2014_cincocerros+Gilarranz2014_difuntito+Gilarranz2014_difuntos+Gilarranz2014_elmorro+Gilarranz2014_labrava+Gilarranz2014_lachata+Gilarranz2014_lapaja+Gilarranz2014_piedraalta+Gilarranz2014_vigilancia+Gilarranz2014_volcan |
| Kaiser-Bunbury2017_Bernica+Kaiser-Bunbury2017_Casse-dent+Kaiser-Bunbury2017_Copolia+Kaiser-Bunbury2017_La-Reserve+Kaiser-Bunbury2017_Rosebelle+Kaiser-Bunbury2017_Salazie+Kaiser-Bunbury2017_Tea-Plantation+Kaiser-Bunbury2017_Trois-Freres |
| Fang2012 |
| Aizen2008_Puerto Blest_U+Aizen2008_Puerto Blest_D |
| Chamberlain_Site1+Chamberlain_Site2+Chamberlain_Site3+Chamberlain_Site4+Chamberlain_Site5+Chamberlain_Site6 |
| Dupont2009_IsenBjerg+Dupont2009_Other |
| Gibson2006_GA1 |
| Gibson2006_TA1 |
| LaraRomero2016_pe?alara_EP+LaraRomero2016_pe?alara_PA+LaraRomero2016_nevero_EP+LaraRomero2016_nevero_PA |
| Trojelsgaard2015_Tenerife Teno Bajo+Trojelsgaard2015_Tenerife Fasnia |
| Vanbergen2013_balfarm+Vanbergen2013_bridgend+Vanbergen2013_dalhaikie+Vanbergen2013_netherton+Vanbergen2013_backhill+Vanbergen2013_corntulloch+Vanbergen2013_allancreich |
| Pfeiffer_CNE+Pfeiffer_CNM+Pfeiffer_CNT+Pfeiffer_CPB+Pfeiffer_CPM+Pfeiffer_CPR+Pfeiffer_CPS+Pfeiffer_M2+Pfeiffer_RP1+Pfeiffer_RP2+Pfeiffer_LM+Pfeiffer_LO+Pfeiffer_BD+Pfeiffer_BH+Pfeiffer_BS |
| Carstensen_Gigante+Carstensen_Paulino+Carstensen_Tinkerbell+Carstensen_Midway+Carstensen_Cedro+Carstensen_Elefante+Carstensen_Soizig |
| Welti_ID+Welti_K1B+Welti_K4A+Welti_4B+Welti_20B+Welti_20C+Welti_N1A+Welti_N1B+Welti_N4A+Welti_N4B+Welti_N20A+Welti_N20B |
| Grass2013_1+Grass2013_2+Grass2013_3+Grass2013_4+Grass2013_5+Grass2013_6+Grass2013_7+Grass2013_8+Grass2013_9+Grass2013_10+Grass2013_11+Grass2013_12+Grass2013_13+Grass2013_14+Grass2013_15+Grass2013_16+Grass2013_17 |
| Hackett2019_UK_sand_dune+Hackett2019_UK_grassland+Hackett2019_UK_heathland+Hackett2019_UK_woodland+Hackett2019_UK_salt_marsh+Hackett2019_UK_scrub |
| Neli2014 |
Pour la collection 5
Collection 5 - iid
| Networks |
|---|
| olensen2002aig |
| olensen2002flo |
| vazquez2002 |
| Shay2016 |
| Gibson2006_GA2 |
| Gibson2006_SG |
| Trojelsgaard2015_El Hierro |
| Trojelsgaard2015_Fuerteventura |
| Trojelsgaard2015_Western Sahara |
| Robinson2018 |
| CordenizPicanco2018_NatFor |
| CordenizPicanco2018_SemiPast |
| CordenizPicanco2018_IntPast |
| Biella2019 |
| Nel2017 |
| Villalobos2019 |
| LaraRomero2019_blanca+LaraRomero2019_rajada+LaraRomero2019_refugio+LaraRomero2019_torre |
| Ferrero2013 |
| Sritongchuay2019_near+Sritongchuay2019_far |
Et voici donc les valeurs numériques pour les \(\alpha\) (paramètres de connectivité).
Pour la collection 1 : \[\begin{bmatrix} 1 &0.83 &0.43 &0.73 &0.2 &0.5 &0.05 &0.18 \\1 &0.67 &0.36 &0.51 &0.22 &0.3 &0.05 &0.07 \\1 &0.53 &1 &0.01 &0.02 &0.89 &0 &0 \\0.97 &0.45 &0.62 &0.18 &0.47 &0.06 &0.2 &0.03 \\0.76 &0.46 &0.1 &0.27 &0.1 &0.14 &0.02 &0.03 \\0.96 &0.2 &0.37 &0.03 &0.24 &0.01 &0.09 &0.01 \\0.54 &0.28 &0.04 &0.12 &0.03 &0.05 &0.01 &0.01 \\0.69 &0.1 &0.3 &0.02 &0.06 &0.01 &0.03 &0 \\ \end{bmatrix}\] Pour la collection 2 : \[\begin{bmatrix} 0.84 &0.69 &0.13 &0.32 \\0.71 &0.49 &0.11 &0.14 \\0.54 &0.26 &0.14 &0.05 \\0.26 &0.07 &0.14 &0.01 \\ \end{bmatrix}\] Pour la collection 3 : \[\begin{bmatrix} 0.87 &0.33 \\0.11 &0.09 \\ \end{bmatrix}\] Pour la collection 4 : \[\begin{bmatrix} 0.96 &0.83 &0.96 &0.39 &0.8 &0.16 &0.66 \\0.98 &0.86 &0.83 &0.51 &0.56 &0.19 &0.09 \\0.8 &0.46 &0.74 &0.12 &0.4 &0.05 &0.13 \\0.89 &0.69 &0.44 &0.35 &0.15 &0.07 &0.01 \\0.7 &0.29 &0.35 &0.03 &0.15 &0.01 &0.03 \\0.66 &0.43 &0.1 &0.17 &0.03 &0.02 &0 \\0.32 &0.12 &0.02 &0.04 &0 &0 &0 \\ \end{bmatrix}\] Pour la collection 5 : \[\begin{bmatrix} 0.71 &0.9 &0.57 &0.83 \\0.74 &0.22 &0.7 &0.33 \\0.09 &0.44 &0.07 &0.02 \\ \end{bmatrix}\]
Répartition dans les clusters selon la taxonomie
Pollinators repartition for the iid model regarding taxonomy
Pollinators repartition for the iid model regarding taxonomy
Plants repartition for the iid model regarding taxonomy
Plants repartition for the iid model regarding taxonomy
Clustering avec le modèle pi
Avec le modèle pi nous obtenons les 2 collections et les structures suivantes:
Pour la collection 1
Collection 1 - pi
| Networks |
|---|
| arroyo1982_1+arroyo1982_2+arroyo3 |
| eberling1999 |
| inouye1988 |
| kato1990 |
| ramirez1992 |
| petanidou1991 |
| ramirez1989 |
| smith-ramirez2005 |
| Junker2013 |
| Kaiser_control+Kaiser_restored |
| bartomeus2008 |
| Olito-Fox2014 |
| Benadi2013_1(950m)+Benadi2013_2(1170m)+Benadi2013_6(2020m) |
| Benadi2013_3(1340m) |
| Benadi2013_4(1700m)+Benadi2013_5(1800m) |
| Kaiser-Bunbury2017_Bernica+Kaiser-Bunbury2017_Casse-dent+Kaiser-Bunbury2017_Copolia+Kaiser-Bunbury2017_La-Reserve+Kaiser-Bunbury2017_Rosebelle+Kaiser-Bunbury2017_Salazie+Kaiser-Bunbury2017_Tea-Plantation+Kaiser-Bunbury2017_Trois-Freres |
| Fang2012 |
| Shay2016 |
| Struck1994 |
| Kato2000 |
| Aizen2008_Cerro Otto_U+Aizen2008_Cerro Otto_D |
| Aizen2008_Llao-llao_U+Aizen2008_Llao-llao_D |
| Aizen2008_Puerto Blest_U+Aizen2008_Puerto Blest_D |
| Albrecht2010_49yr+Albrecht2010_63yr+Albrecht2010_84yr+Albrecht2010_109yr+Albrecht2010_130yr |
| Baldock2011_TB+Baldock2011_JN |
| Chamberlain_cr1+Chamberlain_cr2+Chamberlain_fs1+Chamberlain_fs2+Chamberlain_go1+Chamberlain_go2+Chamberlain_mm1+Chamberlain_mm2+Chamberlain_mz1+Chamberlain_mz2+Chamberlain_sm1+Chamberlain_sm2 |
| Chamberlain_HLU+Chamberlain_HLG+Chamberlain_OKU+Chamberlain_OKG+Chamberlain_WLU+Chamberlain_WLG+Chamberlain_SOU+Chamberlain_SOG |
| Chamberlain_Site1+Chamberlain_Site2+Chamberlain_Site3+Chamberlain_Site4+Chamberlain_Site5+Chamberlain_Site6 |
| Dattilo2016 |
| Devoto2005_PP+Devoto2005_AP |
| Devoto2005_VT |
| Devoto2005_LL+Devoto2005_CT |
| Dupont2009_IsenBjerg+Dupont2009_Other |
| Freitas2006 |
| Gibson2006_TA1 |
| Gibson2006_TA2 |
| Jedrzejewska2013_Ochata+Jedrzejewska2013_Kabaty |
| LaraRomero2016_pe?alara_EP+LaraRomero2016_pe?alara_PA+LaraRomero2016_nevero_EP+LaraRomero2016_nevero_PA |
| LemusJimenez2003 |
| Marrero2013 |
| MonteroCastano2017_Albufera+MonteroCastano2017_Llimpa+MonteroCastano2017_Tirant |
| Kehinde2014_Joostenberg_Conv+Kehinde2014_Joostenberg_Org+Kehinde2014_Joostenberg_Nat+Kehinde2014_Laibach_Conv+Kehinde2014_Laibach_Org+Kehinde2014_Laibach_Nat+Kehinde2014_Spier_Conv+Kehinde2014_Spier_Nat |
| Pinheiro2008 |
| Trojelsgaard2015_La Gomera |
| Trojelsgaard2015_Tenerife Teno Bajo+Trojelsgaard2015_Tenerife Fasnia |
| Vanbergen2013_balfarm+Vanbergen2013_bridgend+Vanbergen2013_dalhaikie+Vanbergen2013_netherton+Vanbergen2013_backhill+Vanbergen2013_corntulloch+Vanbergen2013_allancreich |
| Zackenberg |
| Yoshihara2008 |
| Watts2016_Chicon+Watts2016_Mantanay+Watts2016_Choquebamba+Watts2016_Huaran+Watts2016_Piscacucho+Watts2016_Poques+Watts2016_Pumamarca+Watts2016_Tiaparo+Watts2016_Yanacocha |
| Kato1993 |
| KatoMiura1996 |
| Kakutani1990 |
| Inoue1990 |
| Fragoso_RA2+Fragoso_RA3+Fragoso_RD1+Fragoso_RD3 |
| PopicThesis |
| Pfeiffer_CNE+Pfeiffer_CNM+Pfeiffer_CNT+Pfeiffer_CPB+Pfeiffer_CPM+Pfeiffer_CPR+Pfeiffer_CPS+Pfeiffer_M2+Pfeiffer_RP1+Pfeiffer_RP2+Pfeiffer_LM+Pfeiffer_LO+Pfeiffer_BD+Pfeiffer_BH+Pfeiffer_BS |
| Carstensen_Gigante+Carstensen_Paulino+Carstensen_Tinkerbell+Carstensen_Midway+Carstensen_Cedro+Carstensen_Elefante+Carstensen_Soizig |
| Orford_B1+Orford_B2+Orford_B3+Orford_B4+Orford_B5+Orford_B10 |
| Orford_B6+Orford_B7+Orford_B8+Orford_B9 |
| Blumel2016 |
| Welti_ID+Welti_K1B+Welti_K4A+Welti_4B+Welti_20B+Welti_20C+Welti_N1A+Welti_N1B+Welti_N4A+Welti_N4B+Welti_N20A+Welti_N20B |
| Souza_cerrado |
| Souza_chaco |
| Souza_pantanal |
| Souza_vereda |
| Grass2013_1+Grass2013_2+Grass2013_3+Grass2013_4+Grass2013_5+Grass2013_6+Grass2013_7+Grass2013_8+Grass2013_9+Grass2013_10+Grass2013_11+Grass2013_12+Grass2013_13+Grass2013_14+Grass2013_15+Grass2013_16+Grass2013_17 |
| Bennett2018 |
| Adedoja2018b_baseZone+Adedoja2018b_MidZone+Adedoja2018b_HighZone+Adedoja2018b_PeakZone |
| Adedoja2019 |
| CordenizPicanco2018_NatVeg |
| Benadi2018 |
| Hackett2019_NZ_salt_marsh+Hackett2019_NZ_sand_dune+Hackett2019_NZ_scrub_coprosma |
| Oleques2019 |
| Jolls2019 |
| Traveset2013_Fernandina |
| Traveset2013_Santiago |
| Traveset2013_SantaCruz |
| Traveset2013_SanCristobal |
| Simanonok2014 |
| Son2019_a1+Son2019_a2+Son2019_a3+Son2019_a4+Son2019_a5+Son2019_a6+Son2019_a7+Son2019_a8+Son2019_F1+Son2019_F2+Son2019_F3+Son2019_F4+Son2019_F5+Son2019_F6+Son2019_F7+Son2019_F8 |
| Baldock2019_Bristol |
| Baldock2019_Edinburgh |
| Baldock2019_Leeds |
| Baldock2019_Reading |
Pour la collection 2
Collection 2 - pi
| Networks |
|---|
| dupont2003 |
| herrera1988 |
| medan2002ld |
| medan2002rb |
| olensen2002aig |
| olensen2002flo |
| small1976 |
| vazquez2002 |
| Burkle2013 |
| Weiner2011 |
| Gilarranz2014_amarante+Gilarranz2014_barrosa+Gilarranz2014_cincocerros+Gilarranz2014_difuntito+Gilarranz2014_difuntos+Gilarranz2014_elmorro+Gilarranz2014_labrava+Gilarranz2014_lachata+Gilarranz2014_lapaja+Gilarranz2014_piedraalta+Gilarranz2014_vigilancia+Gilarranz2014_volcan |
| Aizen2008_Challhuaco_U+Aizen2008_Challhuaco_D |
| Devoto2005_LQ |
| Devoto2005_LT+Devoto2005_LH |
| Gibson2006_GA1 |
| Gibson2006_GA2 |
| Gibson2006_SG |
| Lundgren2005 |
| Trojelsgaard2015_El Hierro |
| Trojelsgaard2015_Gran Canaria |
| Trojelsgaard2015_Fuerteventura |
| Trojelsgaard2015_Western Sahara |
| Fragoso_RA1+Fragoso_RD2 |
| Pornon2017 |
| Kantsa2018 |
| Robinson2018 |
| CordenizPicanco2018_NatFor |
| CordenizPicanco2018_ExoFor |
| CordenizPicanco2018_SemiPast |
| CordenizPicanco2018_IntPast |
| Hackett2019_UK_sand_dune+Hackett2019_UK_grassland+Hackett2019_UK_heathland+Hackett2019_UK_woodland+Hackett2019_UK_salt_marsh+Hackett2019_UK_scrub |
| Biella2019 |
| Nel2017 |
| Villalobos2019 |
| LaraRomero2019_blanca+LaraRomero2019_rajada+LaraRomero2019_refugio+LaraRomero2019_torre |
| Traveset2013_Pinta |
| Ferrero2013 |
| Neli2014 |
| Sritongchuay2019_near+Sritongchuay2019_far |
Et voici donc les valeurs numériques pour les \(\alpha\) (paramètres de connectivité).
Pour la collection 1 : \[\begin{bmatrix} 1 &0.9 &0.92 &0.55 &0.75 &0.57 &0.17 \\0.1 &0.21 &0.81 &0.86 &0.7 &0.4 &0.54 \\0.38 &0.12 &0.03 &0.09 &0.92 &0.65 &0.17 \\0.76 &0.5 &0.1 &0.33 &0.17 &0.04 &0.65 \\0.71 &0.5 &0.18 &0.28 &0.19 &0.04 &0.01 \\0.03 &0.89 &0.4 &0.05 &0.53 &0.2 &0.03 \\0.22 &0.07 &0.01 &0.22 &0.35 &0.21 &0.06 \\0.11 &0.07 &0.01 &0.01 &0.01 &0.6 &0.15 \\0.02 &0.21 &0.06 &0.01 &0.06 &0.01 &0 \\ \end{bmatrix}\] Pour la collection 2 : \[\begin{bmatrix} 0.84 &0.99 &0.66 &0.99 &0.38 &0.79 \\0.79 &0.5 &0.01 &0.19 &0.46 &0.51 \\0.15 &0.02 &0.08 &0.83 &0.22 &0.44 \\0 &0.05 &0.49 &0.07 &0.15 &0 \\0.01 &0.16 &0 &0.04 &0 &0 \\ \end{bmatrix}\]
Répartition dans les clusters selon la taxonomie
Pollinators repartition for the pi model regarding taxonomy
Pollinators repartition for the pi model regarding taxonomy
Plants repartition for the pi model regarding taxonomy
Plants repartition for the pi model regarding taxonomy
Clustering avec le modèle rho
Avec le modèle rho nous obtenons les 1 collections et les structures suivantes:
Pour la collection 1
Collection 1 - rho
| Networks |
|---|
| arroyo1982_1+arroyo1982_2+arroyo3 |
| dupont2003 |
| eberling1999 |
| herrera1988 |
| inouye1988 |
| kato1990 |
| medan2002ld |
| medan2002rb |
| olensen2002aig |
| olensen2002flo |
| ramirez1992 |
| small1976 |
| vazquez2002 |
| petanidou1991 |
| ramirez1989 |
| smith-ramirez2005 |
| Burkle2013 |
| Junker2013 |
| Weiner2011 |
| Kaiser_control+Kaiser_restored |
| bartomeus2008 |
| Olito-Fox2014 |
| Gilarranz2014_amarante+Gilarranz2014_barrosa+Gilarranz2014_cincocerros+Gilarranz2014_difuntito+Gilarranz2014_difuntos+Gilarranz2014_elmorro+Gilarranz2014_labrava+Gilarranz2014_lachata+Gilarranz2014_lapaja+Gilarranz2014_piedraalta+Gilarranz2014_vigilancia+Gilarranz2014_volcan |
| Benadi2013_1(950m)+Benadi2013_2(1170m)+Benadi2013_6(2020m) |
| Benadi2013_3(1340m) |
| Benadi2013_4(1700m)+Benadi2013_5(1800m) |
| Kaiser-Bunbury2017_Bernica+Kaiser-Bunbury2017_Casse-dent+Kaiser-Bunbury2017_Copolia+Kaiser-Bunbury2017_La-Reserve+Kaiser-Bunbury2017_Rosebelle+Kaiser-Bunbury2017_Salazie+Kaiser-Bunbury2017_Tea-Plantation+Kaiser-Bunbury2017_Trois-Freres |
| Fang2012 |
| Shay2016 |
| Struck1994 |
| Kato2000 |
| Aizen2008_Challhuaco_U+Aizen2008_Challhuaco_D |
| Aizen2008_Cerro Otto_U+Aizen2008_Cerro Otto_D |
| Aizen2008_Llao-llao_U+Aizen2008_Llao-llao_D |
| Aizen2008_Puerto Blest_U+Aizen2008_Puerto Blest_D |
| Albrecht2010_49yr+Albrecht2010_63yr+Albrecht2010_84yr+Albrecht2010_109yr+Albrecht2010_130yr |
| Baldock2011_TB+Baldock2011_JN |
| Chamberlain_cr1+Chamberlain_cr2+Chamberlain_fs1+Chamberlain_fs2+Chamberlain_go1+Chamberlain_go2+Chamberlain_mm1+Chamberlain_mm2+Chamberlain_mz1+Chamberlain_mz2+Chamberlain_sm1+Chamberlain_sm2 |
| Chamberlain_HLU+Chamberlain_HLG+Chamberlain_OKU+Chamberlain_OKG+Chamberlain_WLU+Chamberlain_WLG+Chamberlain_SOU+Chamberlain_SOG |
| Chamberlain_Site1+Chamberlain_Site2+Chamberlain_Site3+Chamberlain_Site4+Chamberlain_Site5+Chamberlain_Site6 |
| Dattilo2016 |
| Devoto2005_LQ |
| Devoto2005_PP+Devoto2005_AP |
| Devoto2005_LT+Devoto2005_LH |
| Devoto2005_VT |
| Devoto2005_LL+Devoto2005_CT |
| Dupont2009_IsenBjerg+Dupont2009_Other |
| Freitas2006 |
| Gibson2006_GA1 |
| Gibson2006_GA2 |
| Gibson2006_SG |
| Gibson2006_TA1 |
| Gibson2006_TA2 |
| Jedrzejewska2013_Ochata+Jedrzejewska2013_Kabaty |
| LaraRomero2016_pe?alara_EP+LaraRomero2016_pe?alara_PA+LaraRomero2016_nevero_EP+LaraRomero2016_nevero_PA |
| LemusJimenez2003 |
| Lundgren2005 |
| Marrero2013 |
| MonteroCastano2017_Albufera+MonteroCastano2017_Llimpa+MonteroCastano2017_Tirant |
| Kehinde2014_Joostenberg_Conv+Kehinde2014_Joostenberg_Org+Kehinde2014_Joostenberg_Nat+Kehinde2014_Laibach_Conv+Kehinde2014_Laibach_Org+Kehinde2014_Laibach_Nat+Kehinde2014_Spier_Conv+Kehinde2014_Spier_Nat |
| Pinheiro2008 |
| Trojelsgaard2015_El Hierro |
| Trojelsgaard2015_La Gomera |
| Trojelsgaard2015_Gran Canaria |
| Trojelsgaard2015_Fuerteventura |
| Trojelsgaard2015_Tenerife Teno Bajo+Trojelsgaard2015_Tenerife Fasnia |
| Trojelsgaard2015_Western Sahara |
| Vanbergen2013_balfarm+Vanbergen2013_bridgend+Vanbergen2013_dalhaikie+Vanbergen2013_netherton+Vanbergen2013_backhill+Vanbergen2013_corntulloch+Vanbergen2013_allancreich |
| Zackenberg |
| Yoshihara2008 |
| Watts2016_Chicon+Watts2016_Mantanay+Watts2016_Choquebamba+Watts2016_Huaran+Watts2016_Piscacucho+Watts2016_Poques+Watts2016_Pumamarca+Watts2016_Tiaparo+Watts2016_Yanacocha |
| Kato1993 |
| KatoMiura1996 |
| Kakutani1990 |
| Inoue1990 |
| Fragoso_RA1+Fragoso_RD2 |
| Fragoso_RA2+Fragoso_RA3+Fragoso_RD1+Fragoso_RD3 |
| PopicThesis |
| Pfeiffer_CNE+Pfeiffer_CNM+Pfeiffer_CNT+Pfeiffer_CPB+Pfeiffer_CPM+Pfeiffer_CPR+Pfeiffer_CPS+Pfeiffer_M2+Pfeiffer_RP1+Pfeiffer_RP2+Pfeiffer_LM+Pfeiffer_LO+Pfeiffer_BD+Pfeiffer_BH+Pfeiffer_BS |
| Carstensen_Gigante+Carstensen_Paulino+Carstensen_Tinkerbell+Carstensen_Midway+Carstensen_Cedro+Carstensen_Elefante+Carstensen_Soizig |
| Pornon2017 |
| Orford_B1+Orford_B2+Orford_B3+Orford_B4+Orford_B5+Orford_B10 |
| Orford_B6+Orford_B7+Orford_B8+Orford_B9 |
| Blumel2016 |
| Welti_ID+Welti_K1B+Welti_K4A+Welti_4B+Welti_20B+Welti_20C+Welti_N1A+Welti_N1B+Welti_N4A+Welti_N4B+Welti_N20A+Welti_N20B |
| Kantsa2018 |
| Souza_cerrado |
| Souza_chaco |
| Souza_pantanal |
| Souza_vereda |
| Grass2013_1+Grass2013_2+Grass2013_3+Grass2013_4+Grass2013_5+Grass2013_6+Grass2013_7+Grass2013_8+Grass2013_9+Grass2013_10+Grass2013_11+Grass2013_12+Grass2013_13+Grass2013_14+Grass2013_15+Grass2013_16+Grass2013_17 |
| Robinson2018 |
| Bennett2018 |
| Adedoja2018b_baseZone+Adedoja2018b_MidZone+Adedoja2018b_HighZone+Adedoja2018b_PeakZone |
| Adedoja2019 |
| CordenizPicanco2018_NatFor |
| CordenizPicanco2018_NatVeg |
| CordenizPicanco2018_ExoFor |
| CordenizPicanco2018_SemiPast |
| CordenizPicanco2018_IntPast |
| Benadi2018 |
| Hackett2019_NZ_salt_marsh+Hackett2019_NZ_sand_dune+Hackett2019_NZ_scrub_coprosma |
| Hackett2019_UK_sand_dune+Hackett2019_UK_grassland+Hackett2019_UK_heathland+Hackett2019_UK_woodland+Hackett2019_UK_salt_marsh+Hackett2019_UK_scrub |
| Oleques2019 |
| Biella2019 |
| Jolls2019 |
| Nel2017 |
| Villalobos2019 |
| LaraRomero2019_blanca+LaraRomero2019_rajada+LaraRomero2019_refugio+LaraRomero2019_torre |
| Traveset2013_Fernandina |
| Traveset2013_Pinta |
| Traveset2013_Santiago |
| Traveset2013_SantaCruz |
| Traveset2013_SanCristobal |
| Ferrero2013 |
| Simanonok2014 |
| Son2019_a1+Son2019_a2+Son2019_a3+Son2019_a4+Son2019_a5+Son2019_a6+Son2019_a7+Son2019_a8+Son2019_F1+Son2019_F2+Son2019_F3+Son2019_F4+Son2019_F5+Son2019_F6+Son2019_F7+Son2019_F8 |
| Neli2014 |
| Sritongchuay2019_near+Sritongchuay2019_far |
| Baldock2019_Bristol |
| Baldock2019_Edinburgh |
| Baldock2019_Leeds |
| Baldock2019_Reading |
Et voici donc les valeurs numériques pour les \(\alpha\) (paramètres de connectivité).
Pour la collection 1 : \[\begin{bmatrix} 0.77 &0.91 &0.64 &0.73 &0.09 &0.34 &0.98 &0.9 &0.41 \\0.63 &0.09 &0.15 &0.94 &0.56 &0.6 &0.25 &0.24 &0.05 \\0.59 &0.73 &0.19 &0.38 &0.04 &0.09 &0.51 &0.22 &0.46 \\0.07 &0.19 &0.02 &0.73 &0.58 &0.2 &0.22 &0.04 &0.03 \\0.69 &0.13 &0.34 &0.03 &0.1 &0.01 &0.53 &0.33 &0.08 \\0.09 &0.02 &0.01 &0.27 &0.06 &0.12 &0.01 &0.04 &0 \\ \end{bmatrix}\]
Répartition dans les clusters selon la taxonomie
Pollinators repartition for the rho model regarding taxonomy
Pollinators repartition for the rho model regarding taxonomy
Plants repartition for the rho model regarding taxonomy
Plants repartition for the rho model regarding taxonomy
Clustering avec le modèle pirho
Avec le modèle pirho nous obtenons les 15 collections et les structures suivantes:
Pour la collection 1
Collection 1 - pirho
| Networks |
|---|
| arroyo1982_1+arroyo1982_2+arroyo3 |
| dupont2003 |
| petanidou1991 |
| Aizen2008_Challhuaco_U+Aizen2008_Challhuaco_D |
| Aizen2008_Llao-llao_U+Aizen2008_Llao-llao_D |
| Jedrzejewska2013_Ochata+Jedrzejewska2013_Kabaty |
| Pinheiro2008 |
| Souza_pantanal |
| Robinson2018 |
| Jolls2019 |
| Traveset2013_Fernandina |
| Baldock2019_Leeds |
| Baldock2019_Reading |
Pour la collection 2
Collection 2 - pirho
| Networks |
|---|
| Benadi2013_3(1340m) |
| Trojelsgaard2015_La Gomera |
| CordenizPicanco2018_SemiPast |
Pour la collection 3
Collection 3 - pirho
| Networks |
|---|
| Kato2000 |
| Freitas2006 |
| Inoue1990 |
| Souza_cerrado |
| Adedoja2019 |
| Baldock2019_Bristol |
Pour la collection 4
Collection 4 - pirho
| Networks |
|---|
| Aizen2008_Puerto Blest_U+Aizen2008_Puerto Blest_D |
| LemusJimenez2003 |
Pour la collection 5
Collection 5 - pirho
| Networks |
|---|
| inouye1988 |
| Junker2013 |
| Kehinde2014_Joostenberg_Conv+Kehinde2014_Joostenberg_Org+Kehinde2014_Joostenberg_Nat+Kehinde2014_Laibach_Conv+Kehinde2014_Laibach_Org+Kehinde2014_Laibach_Nat+Kehinde2014_Spier_Conv+Kehinde2014_Spier_Nat |
| Watts2016_Chicon+Watts2016_Mantanay+Watts2016_Choquebamba+Watts2016_Huaran+Watts2016_Piscacucho+Watts2016_Poques+Watts2016_Pumamarca+Watts2016_Tiaparo+Watts2016_Yanacocha |
| Kakutani1990 |
| Fragoso_RA1+Fragoso_RD2 |
| Souza_chaco |
| Oleques2019 |
Pour la collection 6
Collection 6 - pirho
| Networks |
|---|
| medan2002ld |
| small1976 |
| smith-ramirez2005 |
| Benadi2013_1(950m)+Benadi2013_2(1170m)+Benadi2013_6(2020m) |
| Shay2016 |
| Aizen2008_Cerro Otto_U+Aizen2008_Cerro Otto_D |
| Lundgren2005 |
| Zackenberg |
| Carstensen_Gigante+Carstensen_Paulino+Carstensen_Tinkerbell+Carstensen_Midway+Carstensen_Cedro+Carstensen_Elefante+Carstensen_Soizig |
| Welti_ID+Welti_K1B+Welti_K4A+Welti_4B+Welti_20B+Welti_20C+Welti_N1A+Welti_N1B+Welti_N4A+Welti_N4B+Welti_N20A+Welti_N20B |
| Bennett2018 |
| CordenizPicanco2018_NatFor |
| CordenizPicanco2018_ExoFor |
| CordenizPicanco2018_IntPast |
| Benadi2018 |
| Villalobos2019 |
| Traveset2013_Santiago |
| Traveset2013_SantaCruz |
| Son2019_a1+Son2019_a2+Son2019_a3+Son2019_a4+Son2019_a5+Son2019_a6+Son2019_a7+Son2019_a8+Son2019_F1+Son2019_F2+Son2019_F3+Son2019_F4+Son2019_F5+Son2019_F6+Son2019_F7+Son2019_F8 |
| Sritongchuay2019_near+Sritongchuay2019_far |
Pour la collection 7
Collection 7 - pirho
| Networks |
|---|
| medan2002rb |
| olensen2002flo |
| vazquez2002 |
| Trojelsgaard2015_Gran Canaria |
| Trojelsgaard2015_Western Sahara |
| LaraRomero2019_blanca+LaraRomero2019_rajada+LaraRomero2019_refugio+LaraRomero2019_torre |
Pour la collection 8
Collection 8 - pirho
| Networks |
|---|
| Weiner2011 |
| Kaiser_control+Kaiser_restored |
| Gilarranz2014_amarante+Gilarranz2014_barrosa+Gilarranz2014_cincocerros+Gilarranz2014_difuntito+Gilarranz2014_difuntos+Gilarranz2014_elmorro+Gilarranz2014_labrava+Gilarranz2014_lachata+Gilarranz2014_lapaja+Gilarranz2014_piedraalta+Gilarranz2014_vigilancia+Gilarranz2014_volcan |
| Kaiser-Bunbury2017_Bernica+Kaiser-Bunbury2017_Casse-dent+Kaiser-Bunbury2017_Copolia+Kaiser-Bunbury2017_La-Reserve+Kaiser-Bunbury2017_Rosebelle+Kaiser-Bunbury2017_Salazie+Kaiser-Bunbury2017_Tea-Plantation+Kaiser-Bunbury2017_Trois-Freres |
| Fang2012 |
| Gibson2006_SG |
| Gibson2006_TA1 |
| Trojelsgaard2015_Fuerteventura |
| Pfeiffer_CNE+Pfeiffer_CNM+Pfeiffer_CNT+Pfeiffer_CPB+Pfeiffer_CPM+Pfeiffer_CPR+Pfeiffer_CPS+Pfeiffer_M2+Pfeiffer_RP1+Pfeiffer_RP2+Pfeiffer_LM+Pfeiffer_LO+Pfeiffer_BD+Pfeiffer_BH+Pfeiffer_BS |
| Biella2019 |
| Nel2017 |
| Ferrero2013 |
| Neli2014 |
Pour la collection 9
Collection 9 - pirho
| Networks |
|---|
| eberling1999 |
| ramirez1992 |
| Struck1994 |
| Albrecht2010_49yr+Albrecht2010_63yr+Albrecht2010_84yr+Albrecht2010_109yr+Albrecht2010_130yr |
| Devoto2005_PP+Devoto2005_AP |
| Devoto2005_VT |
| Gibson2006_TA2 |
| MonteroCastano2017_Albufera+MonteroCastano2017_Llimpa+MonteroCastano2017_Tirant |
| Yoshihara2008 |
| PopicThesis |
| Orford_B1+Orford_B2+Orford_B3+Orford_B4+Orford_B5+Orford_B10 |
| Souza_vereda |
| Adedoja2018b_baseZone+Adedoja2018b_MidZone+Adedoja2018b_HighZone+Adedoja2018b_PeakZone |
| Hackett2019_NZ_salt_marsh+Hackett2019_NZ_sand_dune+Hackett2019_NZ_scrub_coprosma |
Pour la collection 10
Collection 10 - pirho
| Networks |
|---|
| herrera1988 |
| Burkle2013 |
| bartomeus2008 |
| Olito-Fox2014 |
| Benadi2013_4(1700m)+Benadi2013_5(1800m) |
| Baldock2011_TB+Baldock2011_JN |
| Chamberlain_HLU+Chamberlain_HLG+Chamberlain_OKU+Chamberlain_OKG+Chamberlain_WLU+Chamberlain_WLG+Chamberlain_SOU+Chamberlain_SOG |
| Chamberlain_Site1+Chamberlain_Site2+Chamberlain_Site3+Chamberlain_Site4+Chamberlain_Site5+Chamberlain_Site6 |
| Devoto2005_LQ |
| Devoto2005_LT+Devoto2005_LH |
| Devoto2005_LL+Devoto2005_CT |
| Dupont2009_IsenBjerg+Dupont2009_Other |
| Gibson2006_GA1 |
| LaraRomero2016_pe?alara_EP+LaraRomero2016_pe?alara_PA+LaraRomero2016_nevero_EP+LaraRomero2016_nevero_PA |
| Marrero2013 |
| Trojelsgaard2015_Tenerife Teno Bajo+Trojelsgaard2015_Tenerife Fasnia |
| Vanbergen2013_balfarm+Vanbergen2013_bridgend+Vanbergen2013_dalhaikie+Vanbergen2013_netherton+Vanbergen2013_backhill+Vanbergen2013_corntulloch+Vanbergen2013_allancreich |
| Fragoso_RA2+Fragoso_RA3+Fragoso_RD1+Fragoso_RD3 |
| Pornon2017 |
| Orford_B6+Orford_B7+Orford_B8+Orford_B9 |
| Blumel2016 |
| Kantsa2018 |
| Grass2013_1+Grass2013_2+Grass2013_3+Grass2013_4+Grass2013_5+Grass2013_6+Grass2013_7+Grass2013_8+Grass2013_9+Grass2013_10+Grass2013_11+Grass2013_12+Grass2013_13+Grass2013_14+Grass2013_15+Grass2013_16+Grass2013_17 |
| CordenizPicanco2018_NatVeg |
| Hackett2019_UK_sand_dune+Hackett2019_UK_grassland+Hackett2019_UK_heathland+Hackett2019_UK_woodland+Hackett2019_UK_salt_marsh+Hackett2019_UK_scrub |
| Traveset2013_Pinta |
| Traveset2013_SanCristobal |
| Simanonok2014 |
| Baldock2019_Edinburgh |
Pour la collection 11
Collection 11 - pirho
| Networks |
|---|
| kato1990 |
| ramirez1989 |
| Kato1993 |
Pour la collection 12
Collection 12 - pirho
| Networks |
|---|
| Chamberlain_cr1+Chamberlain_cr2+Chamberlain_fs1+Chamberlain_fs2+Chamberlain_go1+Chamberlain_go2+Chamberlain_mm1+Chamberlain_mm2+Chamberlain_mz1+Chamberlain_mz2+Chamberlain_sm1+Chamberlain_sm2 |
| Dattilo2016 |
| KatoMiura1996 |
Pour la collection 13
Collection 13 - pirho
| Networks |
|---|
| olensen2002aig |
Pour la collection 14
Collection 14 - pirho
| Networks |
|---|
| Trojelsgaard2015_El Hierro |
Pour la collection 15
Collection 15 - pirho
| Networks |
|---|
| Gibson2006_GA2 |
Et voici donc les valeurs numériques pour les \(\alpha\) (paramètres de connectivité).
Pour la collection 1 : \[\begin{bmatrix} 0.52 &0.6 &0.34 &0.1 &0.15 &0 &0.36 \\0.12 &0.93 &0.01 &0.01 &0 &0.61 &0.16 \\0.05 &0.31 &0.02 &0.08 &0.37 &0.27 &0.12 \\0.04 &0.05 &0.01 &0.38 &0.03 &0.01 &0.17 \\0 &0.03 &0.16 &0.11 &0.04 &0.01 &0.01 \\0.01 &0.22 &0.02 &0.01 &0.05 &0 &0.01 \\ \end{bmatrix}\] Pour la collection 2 : \[\begin{bmatrix} 0.66 &0.23 \\0.2 &0.05 \\ \end{bmatrix}\] Pour la collection 3 : \[\begin{bmatrix} 0.64 &0.32 &0.11 &0.53 &0.19 &0.05 \\0.47 &0.21 &0.02 &0.19 &0.07 &0.03 \\0.16 &0.05 &0.01 &0.07 &0.01 &0 \\ \end{bmatrix}\] Pour la collection 4 : \[\begin{bmatrix} 0.45 &0.07 \\0.22 &0.62 \\0.23 &0.04 \\ \end{bmatrix}\] Pour la collection 5 : \[\begin{bmatrix} 0.78 &0.43 &0.16 &0.56 \\0.29 &0.04 &0.22 &0.08 \\0.02 &0.12 &0.03 &0 \\ \end{bmatrix}\] Pour la collection 6 : \[\begin{bmatrix} 0.82 &0.63 &0.2 &0.74 \\0.34 &0.07 &0.41 &0.13 \\0.02 &0.16 &0.03 &0 \\ \end{bmatrix}\] Pour la collection 7 : \[\begin{bmatrix} 0.9 &0.46 &0.72 \\0.17 &0.37 &0.03 \\ \end{bmatrix}\] Pour la collection 8 : \[\begin{bmatrix} 0.66 &0.97 &0.72 &1 &0.13 &0.71 &0 \\0.99 &0.93 &0.84 &0.64 &0.5 &0.11 &0.17 \\0.71 &0.7 &0.28 &0.32 &0.13 &0.07 &0.05 \\0.96 &0.46 &0.75 &0.14 &0.39 &0.01 &0.07 \\0.62 &0.36 &0.09 &0.11 &0.04 &0.02 &0.01 \\0.62 &0.12 &0.43 &0.02 &0.17 &0 &0.02 \\0.33 &0.03 &0.14 &0 &0.03 &0 &0 \\ \end{bmatrix}\] Pour la collection 9 : \[\begin{bmatrix} 0.59 &0.17 &0.32 \\0.06 &0.15 &0.02 \\ \end{bmatrix}\] Pour la collection 10 : \[\begin{bmatrix} 0.91 &0.62 &0.3 &0.79 &0.44 \\0.15 &0.7 &0.32 &0.07 &0.36 \\0.15 &0.03 &0.16 &0.05 &0.01 \\ \end{bmatrix}\] Pour la collection 11 : \[\begin{bmatrix} 0.09 &0.36 &1 &0.12 &0.41 \\0.33 &0 &0.07 &0.46 &0.09 \\0 &0.01 &0.07 &0.14 &0 \\0.03 &0.16 &0.02 &0 &0 \\ \end{bmatrix}\] Pour la collection 12 : \[\begin{bmatrix} 0.68 &0.37 &0.12 \\0.41 &0.17 &0.04 \\0.19 &0.05 &0.01 \\ \end{bmatrix}\] Pour la collection 13 : \[\begin{bmatrix} 0.78 \\0.19 \\ \end{bmatrix}\] Pour la collection 14 : \[\begin{bmatrix} 0.44 &0.08 \\ \end{bmatrix}\] Pour la collection 15 : \[\begin{bmatrix} 0.42 &1 \\0.35 &0.01 \\ \end{bmatrix}\]
Répartition dans les clusters selon la taxonomie
Pollinators repartition for the pirho model regarding taxonomy
Pollinators repartition for the pirho model regarding taxonomy
Plants repartition for the pirho model regarding taxonomy
Plants repartition for the pirho model regarding taxonomy